PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0434.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 364aa    MW: 40512.3 Da    PI: 9.9856
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0434.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19216249134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Bostr.7867s0434.1.p 216 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 249
                          *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-19210261IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-12213251No hitNo description
Gene3DG3DSA:3.30.50.103.3E-15214249IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-14215247No hitNo description
PfamPF003205.2E-17216249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440216241IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44216246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGSNFHYTID LNEDQNHQPF FSSLRSSFHQ HHHQQHFHHQ ASSNPSSSMS PSLSYFPFLI  60
DSHQDQVYVG YNNNTFHGIL DTHLSRPLET KKFVSDGGSS SSDQMVPKKE TQLKLTIKKK  120
DNHQDQTNLP QYPKKGKTGT NTLKWVSSKV RLMKKKKAII TTTDSNKGHV NNDQSSNQSN  180
LEGDHDHLKK ISTNQYNIIV NQNGYNGSND CVIRICSDCN TTKTPLWRSG PRGPKSLCNA  240
CGIRQRKARR AAATATATEI SDVLPPLLKK KMQNKNKRSN GVYNLSSPSA KRMITVEEAA  300
AAGDLETQSK STMLSSSSSS NKFYFDDLAI TLSKSSAYQQ VFPQDEKEAA ILLMALSYGM  360
VHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0494832e-94AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBankAL1615642e-94AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBankCP0026872e-94CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438794.10.0PREDICTED: putative GATA transcription factor 22
SwissprotQ9SZI61e-158GAT22_ARATH; Putative GATA transcription factor 22
TrEMBLR0GJ600.0R0GJ60_9BRAS; Uncharacterized protein
STRINGBra019118.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-143cytokinin-responsive gata factor 1